Download

Here you can download our databases of oligonucleotide sequences. The software needed to run our probe design tool locally on your machine can be downloaded from its github repository. You can find all the instructions on how to install and run our software here. As we are continuously designing new oligo databases, please check this page regularly to see which new databases have been added.
All files are available in gzip format (.gz), more info here.
Note: the files below need to be formatted with ifpd_mkdb before they can be used.

Type Parameters Download
Full 40-mer
  • 40-mers
  • 35-80% GC-content
  • ±10 °C Tm range around the average
  • 7+ nt homopolymer filter
  • 70% homology threshold
  • 65 °C secondary structure temperature
hg19 (568 Mb)
chr1 (43 Mb)
chr2 (46 Mb)
chr3 (38 Mb)
chr4 (36 Mb)
chr5 (34 Mb)
chr6 (33 Mb)
chr7 (29 Mb)
chr8 (28 Mb)
chr9 (22 Mb)
chr10 (26 Mb)
chr11 (26 Mb)
chr12 (26 Mb)
chr13 (19 Mb)
chr14 (17 Mb)
chr15 (16 Mb)
chr16 (15 Mb)
chr17 (15 Mb)
chr18 (15 Mb)
chr19 (11 Mb)
chr20 (12 Mb)
chr21 (6,7 Mb)
chr22 (6,6 Mb)
chrX (28 Mb)
chrY (2,7 Mb)
Clean 40-mer
  • 40-mers
  • 35-80% GC-content
  • ±10 °C Tm range around the average
  • 7+ nt homopolymer filter
  • 70% homology threshold
  • 65 °C secondary structure temperature
  • 5+ mistmatches filter
hg19 (505 Mb)
chr1 (39 Mb)
chr2 (41 Mb)
chr3 (34 Mb)
chr4 (32 Mb)
chr5 (31 Mb)
chr6 (29 Mb)
chr7 (26 Mb)
chr8 (25 Mb)
chr9 (20 Mb)
chr10 (23 Mb)
chr11 (23 Mb)
chr12 (23 Mb)
chr13 (17 Mb)
chr14 (16 Mb)
chr15 (14 Mb)
chr16 (14 Mb)
chr17 (14 Mb)
chr18 (14 Mb)
chr19 (8,7 Mb)
chr20 (11 Mb)
chr21 (6,0 Mb)
chr22 (6,0 Mb)
chrX (24 Mb)
chrY (2,5 Mb)